limorhyde
Differential Analysis of Rhythmic Transcriptome Data
v1.0.3
·
Jan 20, 2026
·
GPL-2
Description
A flexible approach, inspired by cosinor regression, for differential analysis of rhythmic transcriptome data. See Singer and Hughey (2018) <doi:10.1177/0748730418813785>.
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CRAN Check Status
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NOTE
12
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
NOTE
r-oldrel-macos-x86_64
package vignettes
Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file?
Check History
NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 27, 2026
NOTE
r-oldrel-macos-x86_64
package vignettes
Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file?
ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 21, 2026
ERROR
r-release-linux-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from introduction.Rmd:21-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> E ...[truncated]... tte 'introduction.Rmd' failed with diagnostics: there is no package called 'annotate' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted
NOTE
r-oldrel-macos-x86_64
package vignettes
Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file?
NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 19, 2026
NOTE
r-oldrel-macos-x86_64
package vignettes
Package has ‘vignettes’ subdirectory but apparently no vignettes. Perhaps the ‘VignetteBuilder’ information is missing from the DESCRIPTION file?
ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-release-macos-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building ‘introduction.Rmd’ using rmarkdown Quitting from introduction.Rmd:21-29 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error i ...[truncated]... 'introduction.Rmd' failed with diagnostics: there is no package called 'org.Mm.eg.db' --- failed re-building ‘introduction.Rmd’ SUMMARY: processing the following file failed: ‘introduction.Rmd’ Error: Vignette re-building failed. Execution halted
ERROR
r-oldrel-macos-arm64
package dependencies
Package suggested but not available for checking: ‘org.Mm.eg.db’