Description
Fast and accurate inference of gene-environment associations (GEA) in genome-wide studies (Caye et al., 2019, <doi:10.1093/molbev/msz008>). We developed a least-squares estimation approach for confounder and effect sizes estimation that provides a unique framework for several categories of genomic data, not restricted to genotypes. The speed of the new algorithm is several times faster than the existing GEA approaches, then our previous version of the 'LFMM' program present in the 'LEA' package (Frichot and Francois, 2015, <doi:10.1111/2041-210X.12382>).
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
Check History
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
installed package size
installed size is 11.4Mb
sub-directories of 1Mb or more:
data 1.8Mb
libs 9.1Mb
installed package size
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 9.3Mb
ERROR 9 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/lfmm.Rcheck/00install.out' for details.
installed package size
installed size is 11.4Mb
sub-directories of 1Mb or more:
data 1.8Mb
libs 9.1Mb
installed package size
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 9.3Mb
NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘ggplot2’ ‘knitr’ ‘purrr’ ‘rmarkdown’ All declared Imports should be used.
installed package size
installed size is 11.4Mb
sub-directories of 1Mb or more:
data 1.8Mb
libs 9.1Mb
installed package size
installed size is 11.9Mb
sub-directories of 1Mb or more:
data 2.0Mb
libs 9.3Mb