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kangar00

Kernel Approaches for Nonlinear Genetic Association Regression

v1.4.2 · May 8, 2024 · GPL-2

Description

Methods to extract information on pathways, genes and various single-nucleotid polymorphisms (SNPs) from online databases. It provides functions for data preparation and evaluation of genetic influence on a binary outcome using the logistic kernel machine test (LKMT). Three different kernel functions are offered to analyze genotype information in this variance component test: A linear kernel, a size-adjusted kernel and a network-based kernel).

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
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r-patched-linux-x86_64 OK
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Check History

OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR r-devel-linux-x86_64-debian-gcc

Rd files

cannot open the connection
cannot open the connection
cannot open the connection
cannot open the connection
problems found in ‘lkmt.net.kernel.hsa04020.Rd’, ‘lkmt_test.Rd’, ‘lowrank_kernel-class.Rd’, ‘make_psd-matrix-method.Rd’
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (1)

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Dependencies Reverse dependencies bigmemory sqldf CompQuadForm data.table lattice igraph mboost kangar00

Version History

7 tracked
new 1.4.2 Mar 10, 2026
updated 1.4.2 ← 1.4.1 diff May 8, 2024
updated 1.4.1 ← 1.4 diff Dec 5, 2022
updated 1.4 ← 1.3 diff Feb 16, 2020
updated 1.3 ← 1.1 diff Feb 9, 2019
updated 1.1 ← 1.0 diff Aug 7, 2017
new 1.0 Apr 26, 2017