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intsurv

Integrative Survival Modeling

v0.3.0 · Sep 28, 2025 · GPL (>= 3)

Description

Contains implementations of the integrative Cox model with uncertain event times proposed by Wang, et al. (2020) <doi:10.1214/19-AOAS1287>, the regularized Cox cure rate model with uncertain event status proposed by Wang, et al. (2023) <doi:10.1007/s12561-023-09374-w>, and other survival analysis routines including the Cox cure rate model proposed by Kuk and Chen (1992) <doi:10.1093/biomet/79.3.531> via an EM algorithm proposed by Sy and Taylor (2000) <doi:10.1111/j.0006-341X.2000.00227.x>, the regularized Cox cure rate model with elastic net penalty following Masud et al. (2018) <doi:10.1177/0962280216677748>.

Downloads

CRAN

384

Last 30 days

11301st

912

Last 90 days

4.3K

Last year

Trend: +63.4% (30d vs prior 30d)

r2u CRAN

24

Last 30 days

117

Last 90 days

675

Last year

Trend: -41.5% (30d vs prior 30d)

autoCRAN

1

Last 7 days

11

Last 30 days

1

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 11.8Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.4Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/intsurv.Rcheck/00install.out' for details.
NOTE r-oldrel-macos-arm64

installed package size

installed size is 11.8Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.4Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 11.8Mb
  sub-directories of 1Mb or more:
    libs  11.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.4Mb
  sub-directories of 1Mb or more:
    libs  11.7Mb

Code

Structure

Lines of code

7,499

Files

84

Compiled share

25.6%

Has compiled src

Yes

Language breakdown

R 3,969 (52.9%)C/C++/src 1,923 (25.6%)Tests 19 (0.3%)Docs 1,588 (21.2%)

API

Exported functions

15

Internal functions

71

Recent export changes

v0.3.0+3 cox_cure.control, cox_cure.mstep, cox_cure_net.penalty
v0.2.0+12 Survi, bootSe, cIndex +9 more

Testing & CI

Has tests

Yes

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

100%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

33.3%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.2.3

System requirements

C++ standard

License

GPL (>= 3)

License flags

SPDX valid, OSI approved

History

Versions

4

First release

2019-08-03

Latest release

2025-09-29

Avg cadence

387 days

Cold removal rate

Dep drift

0

LOC over versions

v0.2.0: 12,751 LOCv0.2.1: 7,476 LOCv0.2.2: 7,622 LOCv0.3.0: 7,499 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Dependency Network

Dependencies Reverse dependencies Rcpp intsurv

Version History

5 tracked
new 0.3.0 Mar 10, 2026
updated 0.3.0 ← 0.2.2 diff Sep 28, 2025
updated 0.2.2 ← 0.2.1 diff Jan 7, 2021
updated 0.2.1 ← 0.2.0 diff Dec 17, 2019
new 0.2.0 Aug 2, 2019