This package was removed from CRAN on 2024-10-01. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 1.2.2, its last release before removal.

insectDisease

1.2.2

Ecological Database of the World's Insect Pathogens

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Tad Dallas2 releasesCRAN page ↗

David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at https://edwip.ecology.uga.edu/.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/insectDisease/insectDisease_1.2.2.tar.gz"
pkgFile <- "insectDisease_1.2.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.2.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-insectdisease

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-insectDisease

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.08

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

README

Dependencies · direct

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on99 r2u25 autocran

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.5.0plyr taxize

Imports (0)

none

LinkingTo (0)

none

Suggests (5)

corrplot dplyr knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 664 (30%)Rd 605 (28%)HTML 595 (27%)Vignettes 316 (14%)

Code characteristics

Cyclomatic complexity: 5.0 median / 5 max
Test cases: 4 / 0.08 per code line
Documented parameters: 100%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

1 1 exported

Complexity

5 avg / 5 max

Call network

1 nodes / 0 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Tad Dallas

Author, Maintainer

Authors (1)

Tad Dallas

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-10-01
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.2.2
2023-01-06 · diff ↗
1.2.1
2022-08-24
R
R 4.2.0 released · 2022-04-22

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 939 KB / 15 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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