immundata
A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics
Description
Provides a unified data layer for single-cell, spatial and bulk T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject, but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or VDJ sequencing data.
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11.2K
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61
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181
Last year
Trend: -100% (30d vs prior 30d)
6
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20
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0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
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Trend: -48.1% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘dbplyr’ Package suggested but not available for checking: ‘Seurat’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 24, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 17, 2026
package dependencies
Package required but not available: ‘duckplyr’ Package suggested but not available for checking: ‘duckdb’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 15, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 13, 2026
package dependencies
Package required but not available: ‘duckplyr’ Package suggested but not available for checking: ‘duckdb’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 12, 2026
Rd cross-references
Unknown package ‘anndataR’ in Rd xrefs
Rd cross-references
Unknown package ‘anndataR’ in Rd xrefs
Rd cross-references
Unknown package 'anndataR' in Rd xrefs
ERROR 7 OK · 0 NOTE · 0 WARNING · 7 ERROR · 0 FAILURE Mar 10, 2026
tests
Running ‘testthat.R’ [129s/83s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running ‘testthat.R’ [143s/214s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additiona ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running 'testthat.R' [53s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running ‘testthat.R’ [88s/59s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running ‘testthat.R’ [87s/59s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running 'testthat.R' [50s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
tests
Running 'testthat.R' [71s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... mpleError(msg, call)) 19. └─handlers[[1L]](cnd) 20. └─duckdb:::rethrow_error_from_rapi(e, call) 21. └─rlang::abort(msg, call = call) [ FAIL 17 | WARN 0 | SKIP 0 | PASS 3 ] Error: ! Test failures. Execution halted
Code
Structure
Lines of code
10,994
Files
116
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
42
Internal functions
53
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.80
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
81.8%
\dontrun example ratio
77.8%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
13.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
Apache License (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
5
First release
2025-04-08
Latest release
2026-04-04
Avg cadence
92 days
Cold removal rate
100%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.