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iNEXT.3D

Interpolation and Extrapolation for Three Dimensions of Biodiversity

v1.0.12 · Oct 31, 2025 · GPL (>= 3)

Description

Biodiversity is a multifaceted concept covering different levels of organization from genes to ecosystems. 'iNEXT.3D' extends 'iNEXT' to include three dimensions (3D) of biodiversity, i.e., taxonomic diversity (TD), phylogenetic diversity (PD) and functional diversity (FD). This package provides functions to compute standardized 3D diversity estimates with a common sample size or sample coverage. A unified framework based on Hill numbers and their generalizations (Hill-Chao numbers) are used to quantify 3D. All 3D estimates are in the same units of species/lineage equivalents and can be meaningfully compared. The package features size- and coverage-based rarefaction and extrapolation sampling curves to facilitate rigorous comparison of 3D diversity across individual assemblages. Asymptotic 3D diversity estimates are also provided. See Chao et al. (2021) <doi:10.1111/2041-210X.13682> for more details.

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CRAN Check Status

14 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (2)

Dependency Network

Dependencies Reverse dependencies tibble ggplot2 reshape2 tidytree phyclust dplyr ape Rcpp iNEXT.4steps iNEXT.beta3D iNEXT.3D

Version History

new 1.0.12 Mar 10, 2026
updated 1.0.12 ← 1.0.11 diff Oct 30, 2025
updated 1.0.11 ← 1.0.10 diff Oct 15, 2025
updated 1.0.10 ← 1.0.9 diff Jul 1, 2025
updated 1.0.9 ← 1.0.8 diff Jun 30, 2025
updated 1.0.8 ← 1.0.7 diff Feb 17, 2025
updated 1.0.7 ← 1.0.6 diff Jan 21, 2025
updated 1.0.6 ← 1.0.5 diff Aug 21, 2024
updated 1.0.5 ← 1.0.4 diff Jun 6, 2024
updated 1.0.4 ← 1.0.3 diff Mar 27, 2024
updated 1.0.3 ← 1.0.2 diff Mar 24, 2024
updated 1.0.2 ← 1.0.1 diff Mar 1, 2024
updated 1.0.1 ← 1.0.0 diff Feb 18, 2024
new 1.0.0 Feb 11, 2024