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hlaR

Tools for HLA Data

v1.0.0 · Jan 31, 2023 · MIT + file LICENSE

Description

A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.

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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies devtools tidyverse dplyr reshape2 schoolmath tibble tidyselect stringr purrr tidyr readr janitor hlaR

Version History

new 1.0.0 Mar 10, 2026
updated 1.0.0 ← 0.1.6 diff Jan 30, 2023
updated 0.1.6 ← 0.1.5 diff Dec 20, 2022
updated 0.1.5 ← 0.1.4 diff Oct 23, 2022
updated 0.1.4 ← 0.1.3 diff Sep 11, 2022
updated 0.1.3 ← 0.1.2 diff May 12, 2022
updated 0.1.2 ← 0.1.1 diff Jan 31, 2022
updated 0.1.1 ← 0.1.0 diff Sep 26, 2021
new 0.1.0 Apr 12, 2021