haplotyper
Tool for Clustering Genotypes in Haplotypes
Description
Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
email = "sebastian.simondi@gmail.com"),
person(given = "Gaston",
family = "Quero",
role = c("aut", "cre"),
email = "gastonquero@gmail.com"),
person(given = c("with", "contributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
email = "sebastian.simondi@gmail.com"),
person(given = "Gaston",
family = "Quero",
role = c("aut", "cre"),
email = "gastonquero@gmail.com"),
person(given = c("with", "contributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 9, 2026
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 8, 2026
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Gaston Quero <gastonquero@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Sebastian",
family = "Simondi",
role = "aut",
...[truncated]...
ributions", "from", "Victoria"),
family = "Bonnecarrere",
role = "aut"),
person(given = "Lucia",
family = "Gutierrez",
role = "aut"))
as necessary.
Version History
1 trackedR Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Apr 6, 2016. Releases before tracking aren’t shown.