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hahmmr

Haplotype-Aware Hidden Markov Model for RNA

v1.0.0 · Oct 25, 2023 · MIT + file LICENSE
CRAN GitHub Mirror

Description

Haplotype-aware Hidden Markov Model for RNA (HaHMMR) is a method for detecting copy number variations (CNVs) from bulk RNA-seq data. Additional examples, documentations, and details on the method are available at <https://github.com/kharchenkolab/hahmmr/>.

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2 NOTE
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r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (2 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.5Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.5Mb

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.5Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   3.0Mb
    libs   2.5Mb

Reverse Dependencies (1)

imports

numbat

Dependency Network

Dependencies Reverse dependencies data.table dplyr GenomicRanges ggplot2 glue IRanges patchwork Rcpp stringr tibble zoo numbat hahmmr

Version History

new 1.0.0 Mar 10, 2026