Description
Analysis of multivariate data using generalized linear latent variable models (gllvm). Estimation is performed using either the Laplace method, variational approximations, or extended variational approximations, implemented via TMB (Kristensen et al. (2016), <doi:10.18637/jss.v070.i05>).
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Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | ERROR |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
ERROR
r-patched-linux-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes:
...
--- re-building ‘vignette1.Rmd’ using rmarkdown
--- finished re-building ‘vignette1.Rmd’
--- re-building ‘vignette10.Rmd’ using rmarkdown
--- finished re-building ‘vignette10.Rmd’
--- re-building ‘vignette2.rmd’ using rmarkdown
--- finished re-building ‘vignette2.rmd’
--- re-building ‘vignette3.rmd’ using rmarkdown
Quitting from vignette3.rmd:147-152 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `FAstart()`:
! Calculating starting values failed. Maybe too many latent variables. Try smaller 'num.lv' value or change 'starting.val' to 'zero' or 'random'.
---
Backtrace:
▆
1. └─gllvm::gllvm(y = spider$abund, family = poisson(), num.lv = 2)
2. └─gllvm:::gllvm.iter(...)
3. ├─base::do.call(gllvm.TMB, args)
4. └─gllvm (local) `<fn>`(...)
5. └─gllvm:::start_values_gllvm_TMB(...)
6. └─gllvm:::FAstart(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vignette3.rmd' failed with diagnostics:
Calculating starting values failed. Maybe too many latent variables. Try smaller 'num.lv' value or change 'starting.val' to 'zero' or 'random'.
--- failed re-building ‘vignette3.rmd’
--- re-building ‘vignette4.rmd’ using rmarkdown
--- finished re-building ‘vignette4.rmd’
--- re-building ‘vignette5.Rmd’ using rmarkdown
--- finished re-building ‘vignette5.Rmd’
--- re-building ‘vignette6.Rmd’ using rmarkdown
--- finished re-building ‘vignette6.Rmd’
--- re-building ‘vignette7.Rmd’ using rmarkdown
--- finished re-building ‘vignette7.Rmd’
--- re-building ‘vignette8.Rmd’ using rmarkdown
--- finished re-building ‘vignette8.Rmd’
--- re-building ‘vignette9.Rmd’ using rmarkdown
--- finished re-building ‘vignette9.Rmd’
SUMMARY: processing the following file failed:
‘vignette3.rmd’
Error: Vignette re-building failed.
Execution halted
Additional Issues
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ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 24, 2026
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'vignette1.Rmd' using rmarkdown --- finished re-building 'vignette1.Rmd' --- re-building 'vignette10.Rmd' using rmarkdown --- finished re-building 'vignette10.Rmd' --- re-building 'vignette2.rmd' u ...[truncated]... --- finished re-building 'vignette8.Rmd' --- re-building 'vignette9.Rmd' using rmarkdown --- finished re-building 'vignette9.Rmd' SUMMARY: processing the following file failed: 'vignette4.rmd' Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘vignette1.Rmd’ using rmarkdown --- finished re-building ‘vignette1.Rmd’ --- re-building ‘vignette10.Rmd’ using rmarkdown --- finished re-building ‘vignette10.Rmd’ --- re-building ‘vignette2. ...[truncated]... --- finished re-building ‘vignette8.Rmd’ --- re-building ‘vignette9.Rmd’ using rmarkdown --- finished re-building ‘vignette9.Rmd’ SUMMARY: processing the following file failed: ‘vignette2.rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 12, 2026
WARNING 12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 11, 2026
WARNING
r-devel-linux-x86_64-debian-gcc
PDF version of manual
LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found:
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 24, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 211.9Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 208.7Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 213.8Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 210.6Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 8.4Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 5.3Mb
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 23, 2026
ERROR
r-devel-linux-x86_64-fedora-gcc
whether package can be installed
Installation failed. See ‘/data/gannet/ripley/R/packages/tests-devel/gllvm.Rcheck/00install.out’ for details.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 211.9Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 208.7Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 213.8Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 210.6Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 8.4Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 5.3Mb
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 211.9Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 208.7Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 213.8Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 210.6Mb
NOTE
r-oldrel-windows-x86_64
installed package size
installed size is 8.4Mb
sub-directories of 1Mb or more:
doc 1.8Mb
libs 5.3Mb
Reverse Dependencies (1)
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Version History
23 tracked
new
2.0.5
Mar 10, 2026