Skip to content

ggtaxplot

Create Plots to Visualize Taxonomy

v0.0.1 · Dec 20, 2024 · GPL-3
CRAN GitHub Mirror

Description

Provides a comprehensive suite of functions for processing and visualizing taxonomic data. It includes functionality to clean and transform taxonomic data, categorize it into hierarchical ranks (such as Phylum, Class, Order, Family, and Genus), and calculate the relative abundance of each category. The package also generates a color palette for visual representation of the taxonomic data, allowing users to easily identify and differentiate between various taxonomic groups. Additionally, it features a river plot visualization to effectively display the distribution of individuals across different taxonomic ranks, facilitating insights into taxonomic visualization.

Downloads

227

Last 30 days

20167th

516

Last 90 days

2.2K

Last year

Trend: +45.5% (30d vs prior 30d)

CRAN Check Status

8 ERROR
6 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc ERROR
r-devel-linux-x86_64-fedora-clang ERROR
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 ERROR
r-release-linux-x86_64 ERROR
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 ERROR
Check details (8 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-debian-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-fedora-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'ggtaxplot.Rmd' using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building 'ggtaxplot.Rmd'

SUMMARY: processing the following file failed:
  'ggtaxplot.Rmd'

Error: Vignette re-building failed.
Execution halted
ERROR r-oldrel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'ggtaxplot.Rmd' using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building 'ggtaxplot.Rmd'

SUMMARY: processing the following file failed:
  'ggtaxplot.Rmd'

Error: Vignette re-building failed.
Execution halted
ERROR r-patched-linux-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-release-linux-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-release-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'ggtaxplot.Rmd' using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `devtools::install_git()`:
! The package "remotes" is required.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building 'ggtaxplot.Rmd'

SUMMARY: processing the following file failed:
  'ggtaxplot.Rmd'

Error: Vignette re-building failed.
Execution halted

Check History

ERROR 12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Mar 16, 2026
ERROR r-devel-linux-x86_64-debian-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not
...[truncated]...
essing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-fedora-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘ggtaxplot.Rmd’ using rmarkdown

Quitting from ggtaxplot.Rmd:18-20 [setup_install]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found
...[truncated]...
essing vignette 'ggtaxplot.Rmd' failed with diagnostics:
The package "remotes" is required.
--- failed re-building ‘ggtaxplot.Rmd’

SUMMARY: processing the following file failed:
  ‘ggtaxplot.Rmd’

Error: Vignette re-building failed.
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies ggplot2 dplyr tidyr tidyverse scales RColorBrewer cluster vegan ggalluvial magrittr rlang ggtaxplot

Version History

new 0.0.1 Mar 10, 2026