germinationmetrics
Seed Germination Indices and Curve Fitting
Description
Provides functions to compute various germination indices such as germinability, median germination time, mean germination time, mean germination rate, speed of germination, Timson's index, germination value, coefficient of uniformity of germination, uncertainty of germination process, synchrony of germination etc. from germination count data. Includes functions for fitting cumulative seed germination curves using four-parameter hill function and computation of associated parameters. See the vignette for more, including full list of citations for the methods implemented.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'Introduction.Rmd' using rmarkdown_notangle ! Package pdftex.def Error: File `f7468c4c4f02ba29fb964dc1ab0125210bda3dd2.pdf' not found: using draft setting. Error: processing vignette 'Introduction.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/germinationmetrics.Rcheck/vign_test/germinationmetrics/vignettes/Introduction.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See Introduction.log for more info. --- failed re-building 'Introduction.Rmd' SUMMARY: processing the following file failed: 'Introduction.Rmd' Error: Vignette re-building failed. Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'Introduction.Rmd' using rmarkdown_notangle ! Package pdftex.def Error: File `f7468c4c4f02ba29fb964dc1ab0125210bda3dd2.pdf' not found: using draft setting. Error: processing vignette 'Introduction. ...[truncated]... ihui.org/tinytex/r/#debugging for debugging tips. See Introduction.log for more info. --- failed re-building 'Introduction.Rmd' SUMMARY: processing the following file failed: 'Introduction.Rmd' Error: Vignette re-building failed. Execution halted