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frailtyMMpen

Efficient Algorithm for High-Dimensional Frailty Model

v1.2.1 · Aug 8, 2023 · GPL (>= 2)

Description

The penalized and non-penalized Minorize-Maximization (MM) method for frailty models to fit the clustered data, multi-event data and recurrent data. Least absolute shrinkage and selection operator (LASSO), minimax concave penalty (MCP) and smoothly clipped absolute deviation (SCAD) penalized functions are implemented. All the methods are computationally efficient. These general methods are proposed based on the following papers, Huang, Xu and Zhou (2022) <doi:10.3390/math10040538>, Huang, Xu and Zhou (2023) <doi:10.1177/09622802221133554>.

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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang NOTE
r-devel-linux-x86_64-fedora-gcc NOTE
r-devel-macos-arm64 NOTE
r-devel-windows-x86_64 NOTE
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 NOTE
r-release-macos-arm64 NOTE
r-release-macos-x86_64 NOTE
r-release-windows-x86_64 NOTE
Check details (18 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-debian-clang

compiled code

File ‘frailtyMMpen/libs/frailtyMMpen.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-debian-gcc

compiled code

File ‘frailtyMMpen/libs/frailtyMMpen.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-windows-x86_64

compiled code

File 'frailtyMMpen/libs/x64/frailtyMMpen.dll':
  Found non-API call to R: 'R_UnboundValue'

Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-patched-linux-x86_64

compiled code

File ‘frailtyMMpen/libs/frailtyMMpen.so’:
  Found non-API call to R: ‘R_UnboundValue’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\out{\begin{center}}{\figure{fig4.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:82: Lost braces
    82 | \if{latex}{\out{\begin{center}}{\figure{fig5.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:88: Lost braces
    88 | \if{latex}{\out{\begin{center}}{\figure{fig6.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:93: Lost braces
    93 | \if{latex}{\out{\begin{center}}{\figure{fig7.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:98: Lost braces
    98 | \if{latex}{\out{\begin{cente
...[truncated]...
rs, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
checkRd: (-1) frailtyMMpen.Rd:84: Lost braces
    84 |  \if{latex}{\out{\begin{center}}{\figure{fig15.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:89: Lost braces
    89 |  \if{latex}{\out{\begin{center}}{\figure{fig16.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:94: Lost braces
    94 |  \if{latex}{\out{\begin{center}}{\figure{fig17.png}{options: width=5in}}\out{\end{center}}}
       |                                 ^
checkRd: (-1) frailtyMMpen.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^

Check History

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-debian-gcc

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^
NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) frailtyMM.Rd:71: Lost braces
    71 | \if{latex}{\out{\begin{center}}{\figure{fig1.png}{options: width=5in}}\out{\end{center}}}
       |                                ^
checkRd: (-1) frailtyMM.Rd:77: Lost braces
    77 | \if{latex}{\ou
...[truncated]...
n.Rd:65: Lost braces; missing escapes or markup?
    65 | \item{id}{id for individuals or clusters, {1,2...,a}. Note that, since the original id may not be the sequence starting from 1, this output
       |                                           ^

Dependency Network

Dependencies Reverse dependencies survival numDeriv mgcv Rcpp frailtyMMpen

Version History

new 1.2.1 Mar 10, 2026
updated 1.2.1 ← 1.1.2 diff Aug 7, 2023
updated 1.1.2 ← 1.1.1 diff Jul 6, 2023
updated 1.1.1 ← 1.0.0 diff Jul 5, 2023
new 1.0.0 Mar 23, 2023