fluxfixer

Advanced Framework for Sap Flow Data Post-Process

v1.0.0 · Feb 2, 2026 · MIT + file LICENSE

Description

Provides a flexible framework for post-processing thermal dissipation sap flow data using statistical methods and machine learning. This framework includes anomaly correction, outlier removal, gap-filling, trend removal, signal damping correction, and sap flux density calculation. The functions in this package can also apply to other time series with various artifacts.

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CRAN Check Status

5 ERROR

9 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	298.6s
r-devel-linux-x86_64-debian-gcc	OK	207.8s
r-devel-linux-x86_64-fedora-clang	OK	480.8s
r-devel-linux-x86_64-fedora-gcc	OK	466.2s
r-devel-macos-arm64	ERROR	73s
r-devel-windows-x86_64	OK	253s
r-oldrel-macos-arm64	ERROR	73s
r-oldrel-macos-x86_64	ERROR	282s
r-oldrel-windows-x86_64	OK	319s
r-patched-linux-x86_64	OK	284s
r-release-linux-x86_64	OK	276.5s
r-release-macos-arm64	ERROR	69s
r-release-macos-x86_64	ERROR	253s
r-release-windows-x86_64	OK	242s

Check details (5 non-OK)

ERROR r-devel-macos-arm64

tests

Running ‘testthat.R’ [80s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fluxfixer)
  > 
  > test_check("fluxfixer")
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax calculation by the PD method started
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |==                                                      
...[truncated]...
d
  --- Detrending finished
  Time series retrieval finished
  Quality-control flag determination finished
  Zero-flow condition estimation started
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax time series aggregation started
  --- dTmax time series aggregation finished
  Zero-flow condition estimation finished
  Fd calculation process started
  --- Heartwood correction was not applied
  --- Fd calculation by the SP method finished
  Fd calculation process finished
  *** Fluxfixer finished running successfully ***
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-remove_statistical_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-oldrel-macos-arm64

tests

Running ‘testthat.R’ [76s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fluxfixer)
  > 
  > test_check("fluxfixer")
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax calculation by the PD method started
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |==                                                      
...[truncated]...
d
  --- Detrending finished
  Time series retrieval finished
  Quality-control flag determination finished
  Zero-flow condition estimation started
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax time series aggregation started
  --- dTmax time series aggregation finished
  Zero-flow condition estimation finished
  Fd calculation process started
  --- Heartwood correction was not applied
  --- Fd calculation by the SP method finished
  Fd calculation process finished
  *** Fluxfixer finished running successfully ***
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-remove_statistical_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-oldrel-macos-x86_64

tests

Running ‘testthat.R’ [195s/205s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fluxfixer)
  > 
  > test_check("fluxfixer")
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax calculation by the PD method started
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |==                                                    
...[truncated]...
n by the SP method finished
  --- dTmax time series aggregation started
  --- dTmax time series aggregation finished
  Zero-flow condition estimation finished
  Fd calculation process started
  --- Heartwood correction was not applied
  --- Fd calculation by the SP method finished
  Fd calculation process finished
  *** Fluxfixer finished running successfully ***
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-remove_statistical_outlier.R:28:3'): modifying short-term drifts works ──
  Error in `data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)`: arguments imply differing number of rows: 299, 300
  Backtrace:
      ▆
   1. └─fluxfixer::modify_short_drift(...) at test-remove_statistical_outlier.R:28:3
   2.   └─base::data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-release-macos-arm64

tests

Running ‘testthat.R’ [75s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fluxfixer)
  > 
  > test_check("fluxfixer")
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax calculation by the PD method started
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |==                                                      
...[truncated]...
d
  --- Detrending finished
  Time series retrieval finished
  Quality-control flag determination finished
  Zero-flow condition estimation started
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax time series aggregation started
  --- dTmax time series aggregation finished
  Zero-flow condition estimation finished
  Fd calculation process started
  --- Heartwood correction was not applied
  --- Fd calculation by the SP method finished
  Fd calculation process finished
  *** Fluxfixer finished running successfully ***
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-remove_statistical_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-release-macos-x86_64

tests

Running ‘testthat.R’ [194s/187s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(fluxfixer)
  > 
  > test_check("fluxfixer")
  --- dTmax calculation by the SP method started
  --- dTmax calculation by the SP method finished
  --- dTmax calculation by the PD method started
  
    |                                                                            
    |                                                                      |   0%
    |                                                                            
    |==                                                    
...[truncated]...
n by the SP method finished
  --- dTmax time series aggregation started
  --- dTmax time series aggregation finished
  Zero-flow condition estimation finished
  Fd calculation process started
  --- Heartwood correction was not applied
  --- Fd calculation by the SP method finished
  Fd calculation process finished
  *** Fluxfixer finished running successfully ***
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-remove_statistical_outlier.R:28:3'): modifying short-term drifts works ──
  Error in `data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)`: arguments imply differing number of rows: 299, 300
  Backtrace:
      ▆
   1. └─fluxfixer::modify_short_drift(...) at test-remove_statistical_outlier.R:28:3
   2.   └─base::data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

Check History

ERROR 9 OK · 0 NOTE · 0 WARNING · 5 ERROR · 0 FAILURE Mar 10, 2026

ERROR r-devel-macos-arm64

tests

Running ‘testthat.R’ [81s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional 
...[truncated]...
_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-release-macos-arm64

tests

Running ‘testthat.R’ [76s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional 
...[truncated]...
_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-release-macos-x86_64

tests

Running ‘testthat.R’ [196s/169s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additiona
...[truncated]...
uxfixer::modify_short_drift(...) at test-remove_statistical_outlier.R:28:3
   2.   └─base::data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-oldrel-macos-arm64

tests

Running ‘testthat.R’ [77s/48s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional 
...[truncated]...
_outlier.R:32:3'): modifying short-term drifts works ──
  Expected `abs(corrected[101] - 1)` < 0.1.
  Actual comparison: 1000.0 >= 0.1
  Difference: 999.9 >= 0
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

ERROR r-oldrel-macos-x86_64

tests

Running ‘testthat.R’ [193s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additiona
...[truncated]...
uxfixer::modify_short_drift(...) at test-remove_statistical_outlier.R:28:3
   2.   └─base::data.frame(time = vctr_time, dT = vctr_target, dT_mod = vctr_target)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 48 ]
  Error:
  ! Test failures.
  Execution halted

Dependency Network

Version History

new 1.0.0 Mar 10, 2026