eyeris
Flexible, Extensible, & Reproducible Pupillometry Preprocessing
Description
Pupillometry offers a non-invasive window into the mind and has been used extensively as a psychophysiological readout of arousal signals linked with cognitive processes like attention, stress, and emotional states [Clewett et al. (2020) <doi:10.1038/s41467-020-17851-9>; Kret & Sjak-Shie (2018) <doi:10.3758/s13428-018-1075-y>; Strauch (2024) <doi:10.1016/j.tins.2024.06.002>]. Yet, despite decades of pupillometry research, many established packages and workflows to date lack design patterns based on Findability, Accessibility, Interoperability, and Reusability (FAIR) principles [see Wilkinson et al. (2016) <doi:10.1038/sdata.2016.18>]. 'eyeris' provides a modular, performant, and extensible preprocessing framework for pupillometry data with BIDS-like organization and interactive output reports [Esteban et al. (2019) <doi:10.1038/s41592-018-0235-4>; Gorgolewski et al. (2016) <doi:10.1038/sdata.2016.44>]. Development was supported, in part, by the Stanford Wu Tsai Human Performance Alliance, Stanford Ric Weiland Graduate Fellowship, Stanford Center for Mind, Brain, Computation and Technology, NIH National Institute on Aging Grants (R01-AG065255, R01-AG079345), NSF GRFP (DGE-2146755), McKnight Brain Research Foundation Clinical Translational Research Scholarship in Cognitive Aging and Age-Related Memory Loss, American Brain Foundation, and the American Academy of Neurology.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (4 non-OK)
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
tests
Running 'testthat.R' [123s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(eyeris)
eyeris v3.0.1 - Lumpy Space Princess ꒰•ᴗ•｡꒱۶
Welcome! Type ?`eyeris` to get started.
>
> test_check("eyeris")
i [2026-03-28 05:53:38] [INFO] Created output directory:
D:\temp\2026_03_27_17_37_41_8496\Rtmp8kPsH6/test_chunked_output
v [2026-03-28 05:53:38] [OKAY] Connected to eyeris database:
D:\temp\2026_03_27_17_37_41_8496\Rtmp8kPsH6/bids_test/derivatives/test-db.eyerisdb
i [2026-03-28 05:53:38] [INFO] Exporting data types: confounds_summary
i [2026-03-28 05:53:38]
...[truncated]...
sion failed with error 99
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:28:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:31:5
── Failure ('test-parallel-database.R:51:5'): PBS environment variables are detected for parallel processing ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
pandoc document conversion failed with error 99
Backtrace:
▆
1. ├─withr::with_envvar(...) at test-parallel-database.R:48:3
2. │ └─base::force(code)
3. └─testthat::expect_no_error(...) at test-parallel-database.R:51:5
── Failure ('test-parallel-database.R:70:3'): normal database operation works without parallel processing ──
Expected `{ ... }` not to throw any errors.
Actually got a <simpleError> with message:
pandoc document conversion failed with error 99
[ FAIL 4 | WARN 0 | SKIP 0 | PASS 188 ]
Error:
! Test failures.
Execution halted
Check History
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb
installed package size
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.8Mb
help 1.1Mb