divDyn
Diversity Dynamics using Fossil Sampling Data
Description
Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well as other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) <doi:10.1101/423780>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'handout_pdf.Rmd' using rmarkdown ! Package pdftex.def Error: File `23c1923fcf89fe5e2acfa071c73daa114efdfdc3.pdf' not found: using draft setting. Error: processing vignette 'handout_pdf.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/divDyn.Rcheck/vign_test/divDyn/vignettes/handout_pdf.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See handout_pdf.log for more info. --- failed re-building 'handout_pdf.Rmd' SUMMARY: processing the following file failed: 'handout_pdf.Rmd' Error: Vignette re-building failed. Execution halted
Check History
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 30, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'handout_pdf.Rmd' using rmarkdown ! Package pdftex.def Error: File `23c1923fcf89fe5e2acfa071c73daa114efdfdc3.pdf' not found: using draft setting. Error: processing vignette 'handout_pdf.Rmd' failed ...[truncated]... //yihui.org/tinytex/r/#debugging for debugging tips. See handout_pdf.log for more info. --- failed re-building 'handout_pdf.Rmd' SUMMARY: processing the following file failed: 'handout_pdf.Rmd' Error: Vignette re-building failed. Execution halted