disbayes
Bayesian Multi-State Modelling of Chronic Disease Burden Data
Description
Estimation of incidence and case fatality for a chronic disease, given partial information, using a multi-state model. Given data on age-specific mortality and either incidence or prevalence, Bayesian inference is used to estimate the posterior distributions of incidence, case fatality, and functions of these such as prevalence. The methods are described in Jackson et al. (2023) <doi:10.1093/jrsssa/qnac015>.
Downloads
568
Last 30 days
6481st
1.5K
Last 90 days
3.7K
Last year
Trend: +9.2% (30d vs prior 30d)
25
Last 30 days
130
Last 90 days
420
Last year
Trend: -45.7% (30d vs prior 30d)
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘SHELF’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 25, 2026
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 97.2Mb
sub-directories of 1Mb or more:
libs 96.4Mb
installed package size
installed size is 87.7Mb
sub-directories of 1Mb or more:
libs 86.9Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/disbayes.Rcheck/00install.out' for details.
installed package size
installed size is 97.2Mb
sub-directories of 1Mb or more:
libs 96.4Mb
installed package size
installed size is 87.7Mb
sub-directories of 1Mb or more:
libs 86.9Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 97.2Mb
sub-directories of 1Mb or more:
libs 96.4Mb
installed package size
installed size is 87.7Mb
sub-directories of 1Mb or more:
libs 86.9Mb
for GNU extensions in Makefiles
GNU make is a SystemRequirements.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
61 9 exported
Complexity
5.5 avg / 47 max
Call network
61 nodes / 57 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
14,561
Files
70
Compiled share
65%
Has compiled src
Yes
Language breakdown
API
Exported functions
11
Internal functions
48
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.39
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
88.9%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
15.4%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
1
C++ standard
C++14
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2022-08-22
Latest release
2026-04-27
Avg cadence
672 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.