denvax
Simple Dengue Test and Vaccinate Cost Thresholds
Description
Provides the mathematical model described by "Serostatus Testing & Dengue Vaccine Cost-Benefit Thresholds" in <doi:10.1098/rsif.2019.0234>. Using the functions in the package, that analysis can be repeated using sample life histories, either synthesized from local seroprevalence data using other functions in this package (as in the manuscript) or from some other source. The package provides a vignette which walks through the analysis in the publication, as well as a function to generate a project skeleton for such an analysis.
Downloads
287
Last 30 days
16563rd
644
Last 90 days
2.9K
Last year
Trend: +102.1% (30d vs prior 30d)
0
Last 30 days
24
Last 90 days
87
Last year
Trend: -100% (30d vs prior 30d)
0
Last 7 days
8
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘denvax.Rd’:
https://doi.org/10.1098/rsif.2019.0234
File ‘lazou2016.Rd’:
https://doi.org/10.1056/NEJMoa1503877
File ‘morrison2010.Rd’:
https://doi.org/10.1371/journal.pntd.0000670
File ‘nPxA.Rd’:
https://doi.org/10.1098/rsif.2019.0234
CRAN incoming feasibility
Maintainer: ‘Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘denvax.Rd’:
https://doi.org/10.1098/rsif.2019.0234
File ‘lazou2016.Rd’:
https://doi.org/10.1056/NEJMoa1503877
File ‘morrison2010.Rd’:
https://doi.org/10.1371/journal.pntd.0000670
File ‘nPxA.Rd’:
https://doi.org/10.1098/rsif.2019.0234
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘denvax.Rd’:
https://doi.org/10.1098/rsif.2019.0234
File ‘lazou2016.Rd’:
https://doi.org/10.1056/NEJMoa1503877
File ‘morrison2010.Rd’:
https://doi.org/10.1371/journal.pntd.0000670
File ‘nPxA.Rd’:
https://doi.org/10.1098/rsif.2019.0234
CRAN incoming feasibility
Maintainer: ‘Carl A. B. Pearson <carl.pearson@lshtm.ac.uk>’
Found the following URLs which should use \doi (with the DOI name only):
File ‘denvax.Rd’:
https://doi.org/10.1098/rsif.2019.0234
File ‘lazou2016.Rd’:
https://doi.org/10.1056/NEJMoa1503877
File ‘morrison2010.Rd’:
https://doi.org/10.1371/journal.pntd.0000670
File ‘nPxA.Rd’:
https://doi.org/10.1098/rsif.2019.0234
Code
Structure
Lines of code
1,082
Files
43
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
6
Internal functions
11
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.09
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
0%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
–
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2019-07-19
Latest release
2019-12-01
Avg cadence
68 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.