delimtools

Helper Functions for Species Delimitation Analysis

v0.2.2 · Mar 23, 2026 · MIT + file LICENSE

Description

Helpers functions to process, analyse, and visualize the output of single locus species delimitation methods. For full functionality, please install suggested software at <https://legallab.github.io/delimtools/articles/install.html>.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	126.8s
r-devel-linux-x86_64-debian-gcc	OK	89.6s
r-devel-linux-x86_64-fedora-clang	OK	220.4s
r-devel-linux-x86_64-fedora-gcc	OK	240.9s
r-devel-windows-x86_64	OK	146s
r-oldrel-macos-arm64	OK	47s
r-oldrel-macos-x86_64	OK	130s
r-oldrel-windows-x86_64	OK	185s
r-patched-linux-x86_64	OK	119.1s
r-release-linux-x86_64	OK
r-release-macos-arm64	OK	74s
r-release-macos-x86_64	NOTE	326s
r-release-windows-x86_64	OK	143s

Check details (1 non-OK)

NOTE r-release-macos-x86_64

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Check History

NOTE 9 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

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ERROR 8 OK · 4 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

ERROR r-devel-linux-x86_64-debian-gcc

package dependencies

Package required but not available: ‘ggtree’

Packages suggested but not available for checking: 'bGMYC', 'splits'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-devel-linux-x86_64-fedora-clang

Rd cross-references

Undeclared package ‘viridisLite’ in Rd xrefs
Package unavailable to check Rd xrefs: ‘bGMYC’
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Package unavailable to check Rd xrefs: ‘bGMYC’
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NOTE r-release-macos-x86_64

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Package unavailable to check Rd xrefs: ‘bGMYC’
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NOTE 12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026

NOTE r-release-macos-x86_64

Rd cross-references

Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs

ERROR 11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 3, 2026

ERROR r-release-linux-x86_64

package dependencies

Package required but not available: ‘ggtree’

Packages suggested but not available for checking: 'bGMYC', 'splits'

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NOTE r-release-macos-x86_64

Rd cross-references

Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 24, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 20, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

ERROR r-release-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.5/delimtools.Rcheck/00install.out' for details.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 15, 2026

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/delimtools.Rcheck/00install.out' for details.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE 9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 3, 2026

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-devel-windows-x86_64

Rd cross-references

Package unavailable to check Rd xrefs: 'bGMYC'
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NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

ERROR 8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 2, 2026

NOTE r-devel-linux-x86_64-debian-clang

Rd cross-references

Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

ERROR r-devel-windows-x86_64

whether package can be installed

Installation failed.
See 'd:/Rcompile/CRANpkg/local/4.6/delimtools.Rcheck/00install.out' for details.

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE 10 OK · 4 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Pedro Bittencourt <pedro.sennabittencourt@gmail.com>’

Additional repositories with no packages:
  https://r-forge.r-project.org/

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

Archived

Mar 18, 2026

ERROR 1 OK · 4 NOTE · 0 WARNING · 9 ERROR · 0 FAILURE Mar 10, 2026

ERROR r-devel-linux-x86_64-debian-clang

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partiti
...[truncated]...
├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
delim_autoplot 4.144   0.06   5.374

ERROR r-devel-linux-x86_64-debian-gcc

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partiti
...[truncated]...
[i]], data, mask, new_columns)
 21. │             └─mask$eval_all_mutate(quo)
 22. │               └─dplyr (local) eval()
 23. ├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted

ERROR r-devel-linux-x86_64-fedora-clang

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partitions
> ### Aliases: match_ratio
> 
> ### ** Examples
> 
> 

...[truncated]...
[i]], data, mask, new_columns)
 21. │             └─mask$eval_all_mutate(quo)
 22. │               └─dplyr (local) eval()
 23. ├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted

ERROR r-devel-linux-x86_64-fedora-gcc

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partitions
> ### Aliases: match_ratio
> 
> ### ** Examples
> 
> 

...[truncated]...
[i]], data, mask, new_columns)
 21. │             └─mask$eval_all_mutate(quo)
 22. │               └─dplyr (local) eval()
 23. ├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted

ERROR r-devel-windows-x86_64

Rd cross-references

Package unavailable to check Rd xrefs: 'bGMYC'
Unknown package 'splits' in Rd xrefs

ERROR r-patched-linux-x86_64

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partiti
...[truncated]...
ec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
delim_autoplot  4.034  0.067   5.677
delim_autoplot2 3.691  0.006   5.826

ERROR r-release-linux-x86_64

examples

Running examples in ‘delimtools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partiti
...[truncated]...
[i]], data, mask, new_columns)
 21. │             └─mask$eval_all_mutate(quo)
 22. │               └─dplyr (local) eval()
 23. ├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted

NOTE r-release-macos-arm64

Rd cross-references

Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs

NOTE r-release-macos-x86_64

Rd cross-references

Package unavailable to check Rd xrefs: ‘bGMYC’
Unknown package ‘splits’ in Rd xrefs

ERROR r-release-windows-x86_64

examples

Running examples in 'delimtools-Ex.R' failed
The error most likely occurred in:

> ### Name: match_ratio
> ### Title: Compute Agreement Between Alternative Species Delimitation
> ###   Partitions
> ### Aliases: match_ratio
> 
> ### ** Examples
> 
> 

...[truncated]...
[i]], data, mask, new_columns)
 21. │             └─mask$eval_all_mutate(quo)
 22. │               └─dplyr (local) eval()
 23. ├─dplyr::if_else(...)
 24. │ └─vctrs::vec_if_else(...)
 25. └─rlang::abort(message = message, call = call)
Execution halted

NOTE r-oldrel-macos-arm64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

NOTE r-oldrel-macos-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

ERROR r-oldrel-windows-x86_64

package dependencies

Packages suggested but not available for checking: 'bGMYC', 'splits'

Dependency Network

Version History

5 tracked

new 0.2.2 Mar 23, 2026

removed 0.2.1 Mar 18, 2026

new 0.2.1 Mar 10, 2026

updated 0.2.1 ← 0.2.0 diff Sep 29, 2025

new 0.2.0 Mar 30, 2025