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ctrlGene

Assess the Stability of Candidate Housekeeping Genes

v1.0.1 · Jul 4, 2019 · GPL (>= 2)

Description

A simple way to assess the stability of candidate housekeeping genes is implemented in this package.

Downloads

CRAN

399

Last 30 days

10871st

1K

Last 90 days

3.6K

Last year

Trend: +37.1% (30d vs prior 30d)

r2u CRAN

3

Last 30 days

28

Last 90 days

106

Last year

Trend: -66.7% (30d vs prior 30d)

autoCRAN

7

Last 7 days

9

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

722

Files

19

Compiled share

0%

Has compiled src

No

Language breakdown

R 399 (55.3%)Docs 323 (44.7%)

API

Exported functions

10

Internal functions

0

Recent export changes

v1.0.0+10 bestKeeper, bki, cpSta +7 more

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

80%

\dontrun example ratio

0%

Roxygen coverage

100%

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

0%

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.2.3

System requirements

C++ standard

License

GPL (>= 2)

License flags

SPDX valid, OSI approved

History

Versions

2

First release

2018-09-30

Latest release

2019-07-04

Avg cadence

277 days

Cold removal rate

Dep drift

0

LOC over versions

v1.0.0: 727 LOCv1.0.1: 722 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies psych RQdeltaCT ctrlGene

Version History

3 tracked
new 1.0.1 Mar 10, 2026
updated 1.0.1 ← 1.0.0 diff Jul 3, 2019
new 1.0.0 Sep 29, 2018