cellOrigins
Finds RNASeq Source Tissues Using In Situ Hybridisation Data
Description
Finds the most likely originating tissue(s) and developmental stage(s) of tissue-specific RNA sequencing data. The package identifies both pure transcriptomes and mixtures of transcriptomes. The most likely identity is found through comparisons of the sequencing data with high-throughput in situ hybridisation patterns. Typical uses are the identification of cancer cell origins, validation of cell culture strain identities, validation of single-cell transcriptomes, and validation of identity and purity of flow-sorting and dissection sequencing products.
Downloads
268
Last 30 days
18133rd
619
Last 90 days
2.4K
Last year
Trend: +77.5% (30d vs prior 30d)
0
Last 30 days
23
Last 90 days
296
Last year
Trend: -100% (30d vs prior 30d)
3
Last 7 days
22
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘David Molnar <dmolnar100@icloud.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "David",
family = "Molnar",
role = c("aut", "cre"),
email = "dmolnar100@icloud.com")
as necessary.
Code & tests
Open call graph →Line coverage
–
Expression
–
Tests / Examples
–
Functions
12 0 exported
Complexity
1.7 avg / 3 max
Call network
12 nodes / 3 edges
Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.
Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
721
Files
28
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
0
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
–
\dontrun example ratio
12.5%
Roxygen coverage
–
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
100%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
CC BY-NC-SA 4.0
License flags
not SPDX, not OSI
History
Versions
1
First release
2020-06-05
Latest release
2020-06-05
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.
Dependency Network
Version History
1 trackedR Observatory began tracking this package on Mar 10, 2026; it first appeared on CRAN Jun 5, 2020. Releases before tracking aren’t shown.