blackbox
Black Box Optimization and Exploration of Parameter Space
Description
Performs prediction of a response function from simulated response values, allowing black-box optimization of functions estimated with some error. Includes a simple user interface for such applications, as well as more specialized functions designed to be called by the Migraine software (Rousset and Leblois, 2012 <doi:10.1093/molbev/MSR262>; Leblois et al., 2014 <doi:10.1093/molbev/msu212>; and see URL). The latter functions are used for prediction of likelihood surfaces and implied likelihood ratio confidence intervals, and for exploration of predictor space of the surface. Prediction of the response is based on ordinary Kriging (with residual error) of the input. Estimation of smoothing parameters is performed by generalized cross-validation.
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CRAN Check Status
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | ERROR |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
package dependencies
Package required but not available: ‘spaMM’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
Check History
ERROR 11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
package dependencies
Package required but not available: ‘spaMM’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
installed package size
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.5Mb
installed package size
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 9.7Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/blackbox.Rcheck/00install.out' for details.
installed package size
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.5Mb
installed package size
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 9.7Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
installed package size
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.5Mb
installed package size
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 9.7Mb
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
package dependencies
Packages required but not available: 'geometry', 'spaMM' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
installed package size
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.5Mb
installed package size
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 9.7Mb
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
installed package size
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.5Mb
installed package size
installed size is 10.3Mb
sub-directories of 1Mb or more:
libs 9.7Mb