baskoptr

1.0.4

Utility-Based Optimization for Basket Trial Designs

0packages depend

720downloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lukas D SauerFirst published 2026-04-031 releasesCRAN page ↗GitHub ↗

A unified framework for optimizing basket trial designs. To this end, the package supplies several utility functions and also a function for executing optimization algorithms on basket trial designs. The considered utility functions are discussed in Sauer et al. (2025) doi:10.1371/journal.pone.0323097.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("baskoptr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("LukasDSauer/baskoptr")

Development version from LukasDSauer/baskoptr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-baskoptr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-baskoptr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-baskoptr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 19.4 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.88

not tracked

Coverage

100%

Documentation · exports

None

Vignettes

Yes

README

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-03
3 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

720

CRAN downloads in the past year

Rank #17,724 · ~2/day · ~60/mo

Releases R versions

Daily download trend is not available in this view yet.

24630 days

65590 days

7201 year

Compare downloads with other packages →

Also on26 r2u64 autocran

Repository

GitHub ↗ lukasdsauer/baskoptr

0Stars

0Forks

1Open issues

0Open PRs

1Releases

basket-trialsclinical-trialsoptimizationutility-functions

Releases over time

2026-03-20 · 12026-07-07 · 1

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (2)

baskwrap future.apply

LinkingTo (0)

none

Suggests (5)

optimizr baskexact testthat (>= 3.0.0)progressr basksim

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 1,935 (70%)Rd 830 (30%)

Code characteristics

Cyclomatic complexity: 2.5 median / 23 max
Test cases: 17 / 0.88 per code line
Documented parameters: 94%

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

16 11 exported

Complexity

4.7 avg / 23 max

Call network

16 nodes / 15 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Lukas D Sauer

Author, Maintainer

Authors (1)

Lukas D Sauer

Author, Maintainer

Release timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.4Latest
2026-04-03 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-03
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet