alphabetr

0.2.2

Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells

0packages depend

3.3Kdownloads / year

–test coverage

9/13checks pass

Overview

About

Maintained by Edward LeeFirst published 2017-01-281 releasesCRAN page ↗GitHub ↗

Provides algorithms for frequency-based pairing of alpha-beta T cell receptors.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("alphabetr")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

pak::pak("edwardslee/alphabetr")

Development version from edwardslee/alphabetr. Requires the pak package.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-alphabetr

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-alphabetr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-alphabetr

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

4NOTE9OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

README

Dependencies · direct

Check history

NOTE2026-04-22
7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
6 OK · 7 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
7 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

3.3K

CRAN downloads in the past year

Rank #14,244 · ~9/day · ~275/mo

alphabetr Releases R versions

Daily download trend is not available in this view yet.

30830 days

76790 days

3.3K1 year

Compare downloads with other packages →

Also on422 r2u38 autocran

Source & community

GitHub ↗

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (4)

Rcpp clue dplyr multicool

LinkingTo (1)

Rcpp

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,198 (58%)Rd 794 (21%)Vignettes 446 (12%)C++ 360 (9%)

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

27 15 exported

Complexity

9.9 avg / 24 max

Call network

27 nodes / 9 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Edward Lee

Author, Maintainer

Authors (1)

Edward Lee

Author, Maintainer

Release timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.2.2Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2017-01-28
Total releases: 1 / 9 yrs
License: AGPL (>= 3) OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet