admixr
An Interface for Running 'ADMIXTOOLS' Analyses
Description
An interface for performing all stages of 'ADMIXTOOLS' analyses (<https://github.com/dreichlab/admixtools>) entirely from R. Wrapper functions (D, f4, f3, etc.) completely automate the generation of intermediate configuration files, run 'ADMIXTOOLS' programs on the command-line, and parse output files to extract values of interest. This allows users to focus on the analysis itself instead of worrying about low-level technical details. A set of complementary functions for processing and filtering of data in the 'EIGENSTRAT' format is also provided.
Downloads
405
Last 30 days
10687th
1.1K
Last 90 days
5.5K
Last year
Trend: +29.4% (30d vs prior 30d)
1
Last 30 days
25
Last 90 days
187
Last year
Trend: -88.9% (30d vs prior 30d)
11
Last 7 days
59
Last 30 days
4
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
Code
Structure
Lines of code
10,189
Files
57
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
25
Internal functions
23
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.57
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
76.5%
\dontrun example ratio
100%
Roxygen coverage
96%
Has pkgdown
No
NEWS present
Yes
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
2
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6.0
System requirements
2
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2020-07-03
Latest release
2025-11-22
Avg cadence
1968 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.