VertexWiseR
Simplified Vertex-Wise Analyses of Whole-Brain and Subcortical Surface
Description
Provides functions to run statistical analyses on surface-based neuroimaging data, computing measures including cortical thickness and surface area of the whole-brain and of the hippocampi. It can make use of 'FreeSurfer', 'fMRIprep', 'XCP-D', 'HCP' and 'CAT12' preprocessed datasets, 'HippUnfold' hippocampal outputs and 'SubCortexMesh' subcortical outputs for a given sample by restructuring the data values into a single file. The single file can then be used by the package for analyses independently from its base dataset and without need for its access.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 27, 2026
ERROR 11 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE Jun 21, 2026
examples
Running examples in ‘VertexWiseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RFT_vertex_analysis
> ### Title: Vertex-wise analysis with random field theory cluster correction
...[truncated]...
heads/main/inst/demo_data/SPRENG_CTv_site1.rds': Timeout of 60 seconds was reached
Error in readRDS(file = url(paste0("https://github.com", "/CogBrainHealthLab/VertexWiseR/blob/main/inst/demo_data/", :
cannot read from connection
Execution halted
examples
Running examples in ‘VertexWiseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DTSERIESvextract
> ### Title: DTSERIESvextract
> ### Aliases: DTSERIESvextract
>
> ### ** Example
...[truncated]...
0("https://raw.githubusercontent.com/", "CogBrainHealthLab/VertexWiseR/main/inst/demo_data/", :
download from 'https://raw.githubusercontent.com/CogBrainHealthLab/VertexWiseR/main/inst/demo_data/demo_91k_bold.dtseries.nii' failed
Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘plotly’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 30, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 29, 2026
examples
Running examples in ‘VertexWiseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: smooth_surf
> ### Title: Smooth surface
> ### Aliases: smooth_surf
>
> ### ** Examples
>
> surf_
...[truncated]...
= url(paste0("https://github.com", "/CogBrainHealthLab/VertexWiseR/blob/main/inst/demo_data/", :
cannot open the connection to 'https://github.com/CogBrainHealthLab/VertexWiseR/blob/main/inst/demo_data/FINK_Tv_ses13.rds?raw=TRUE'
Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 10, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 9, 2026
examples
Running examples in ‘VertexWiseR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DTSERIESvextract
> ### Title: DTSERIESvextract
> ### Aliases: DTSERIESvextract
>
> ### ** Example
...[truncated]...
0("https://raw.githubusercontent.com/", "CogBrainHealthLab/VertexWiseR/main/inst/demo_data/", :
download from 'https://raw.githubusercontent.com/CogBrainHealthLab/VertexWiseR/main/inst/demo_data/demo_91k_bold.dtseries.nii' failed
Execution halted