TipDatingBeast
Using Tip Dates with Phylogenetic Trees in BEAST
Description
Assists performing tip-dating of phylogenetic trees with BEAST BEAST is a popular software for phylogenetic analysis. The package assists the implementation of various phylogenetic tip- dating tests using BEAST. It contains two main functions. The first one allows preparing date randomization analyses, which assess the temporal signal of a data set. The second function allows performing leave-one-out analyses, which test for the consistency between independent calibration sequences and allow pinpointing those leading to potential bias. The included tutorial provides detailed step-by-step instructions. An expanded description of the package can be found in article: Rieux, A. and Khatchikian, C.E. (2017), TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST. Molecular Ecology Resources, 17: 608-613. <onlinelibrary.wiley.com/doi/full/10.1111/1755-0998.12603>.
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Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Adrien",
family = "Rieux",
role = "aut"),
person(given = "Camilo",
family = "Khatchikian",
role = c("aut", "cre"),
email = "ckhatchikian@gmail.com"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Adrien",
family = "Rieux",
role = "aut"),
person(given = "Camilo",
family = "Khatchikian",
role = c("aut", "cre"),
email = "ckhatchikian@gmail.com"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Adrien",
family = "Rieux",
role = "aut"),
person(given = "Camilo",
family = "Khatchikian",
role = c("aut", "cre"),
email = "ckhatchikian@gmail.com"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Camilo Khatchikian <ckhatchikian@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Adrien",
family = "Rieux",
role = "aut"),
person(given = "Camilo",
family = "Khatchikian",
role = c("aut", "cre"),
email = "ckhatchikian@gmail.com"))
as necessary.