TDCor
Gene Network Inference from Time-Series Transcriptomic Data
v0.1-2
·
Oct 26, 2015
·
GPL (>= 2)
Description
The Time-Delay Correlation algorithm (TDCor) reconstructs the topology of a gene regulatory network (GRN) from time-series transcriptomic data. The algorithm is described in details in Lavenus et al., Plant Cell, 2015. It was initially developed to infer the topology of the GRN controlling lateral root formation in Arabidopsis thaliana. The time-series transcriptomic dataset which was used in this study is included in the package to illustrate how to use it.
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| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
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r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Mikael Lucas <mikael.lucas@ird.fr>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Julien",
family = "Lavenus",
role = "aut"),
person(given = "Mikael",
family = "Lucas",
role = "cre",
email = "mikael.lucas@ird.fr"))
as necessary.