SmCCNet
Sparse Multiple Canonical Correlation Network Analysis Tool ('SmCCNet')
Description
A canonical correlation based framework ('SmCCNet') designed for the construction of phenotype-specific multi-omics networks. This framework adeptly integrates single or multiple omics data types along with a quantitative or binary phenotype of interest. It offers a streamlined setup process that can be tailored manually or configured automatically, ensuring a flexible and user-friendly experience. Methods are described in Shi et al. (2019) "Unsupervised discovery of phenotype-specific multi-omics networks" <doi:10.1093/bioinformatics/btz226>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ using rmarkdown --- finished re-building ‘SmCCNet_Vignette_AutoSmCCNet.Rmd’ --- re-building ‘SmCCNet_Vignette_MultiOmics.Rmd’ using rmarkdown Quitting from ...[truncated]... called 'tidyverse' --- failed re-building ‘SmCCNet_Vignette_SingleOmics.Rmd’ SUMMARY: processing the following files failed: ‘SmCCNet_Vignette_MultiOmics.Rmd’ ‘SmCCNet_Vignette_SingleOmics.Rmd’ Error: Vignette re-building failed. Execution halted