SMITIDstruct
Data Structure and Manipulations Tool for Host and Viral Population
v0.0.5
·
Jun 14, 2019
·
GPL (>= 2) | file LICENSE
Description
Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID). It allow sequence-space-time host and viral population data storage, indexation and querying.
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CRAN Check Status
10
NOTE
4
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (10 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-clang
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-macos-arm64
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-windows-x86_64
R code for possible problems
diversity.pDistance: no visible global function definition for 'stringDist' Undefined global functions or variables: stringDist
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-patched-linux-x86_64
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
Check History
NOTE 8 OK · 6 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-clang
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-devel-linux-x86_64-fedora-gcc
R code for possible problems
diversity.pDistance: no visible global function definition for ‘stringDist’ Undefined global functions or variables: stringDist
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory