SITH
A Spatial Model of Intra-Tumor Heterogeneity
Description
Implements a three-dimensional stochastic model of cancer growth and mutation similar to the one described in Waclaw et al. (2015) <doi:10.1038/nature14971>. Allows for interactive 3D visualizations of the simulated tumor. Provides a comprehensive summary of the spatial distribution of mutants within the tumor. Contains functions which create synthetic sequencing datasets from the generated tumor.
Downloads
256
Last 30 days
16603rd
600
Last 90 days
2.2K
Last year
Trend: +60% (30d vs prior 30d)
40
Last 30 days
121
Last 90 days
397
Last year
Trend: -20% (30d vs prior 30d)
0
Last 7 days
10
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
ERROR 11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/SITH.Rcheck/00install.out' for details.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Phillip B. Nicol <philnicol740@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = c("Phillip", "B."),
family = "Nicol",
role = c("aut", "cre"),
email = "philnicol740@gmail.com")
as necessary.