SILGGM
Statistical Inference of Large-Scale Gaussian Graphical Model in Gene Networks
Description
Provides a general framework to perform statistical inference of each gene pair and global inference of whole-scale gene pairs in gene networks using the well known Gaussian graphical model (GGM) in a time-efficient manner. We focus on the high-dimensional settings where p (the number of genes) is allowed to be far larger than n (the number of subjects). Four main approaches are supported in this package: (1) the bivariate nodewise scaled Lasso (Ren et al (2015) <doi:10.1214/14-AOS1286>) (2) the de-sparsified nodewise scaled Lasso (Jankova and van de Geer (2017) <doi:10.1007/s11749-016-0503-5>) (3) the de-sparsified graphical Lasso (Jankova and van de Geer (2015) <doi:10.1214/15-EJS1031>) (4) the GGM estimation with false discovery rate control (FDR) using scaled Lasso or Lasso (Liu (2013) <doi:10.1214/13-AOS1169>). Windows users should install 'Rtools' before the installation of this package.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (6 non-OK)
CRAN incoming feasibility
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Rong",
family = "Zhang",
role = c("aut", "cre"),
email = "roz16@pitt.edu"),
person(given = "Zhao",
family = "Ren",
role = "aut"),
person(given = "Wei",
family = "Chen",
role = "aut"))
as necessary.
compiled code
File ‘SILGGM/libs/SILGGM.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
CRAN incoming feasibility
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Rong",
family = "Zhang",
role = c("aut", "cre"),
email = "roz16@pitt.edu"),
person(given = "Zhao",
family = "Ren",
role = "aut"),
person(given = "Wei",
family = "Chen",
role = "aut"))
as necessary.
compiled code
File ‘SILGGM/libs/SILGGM.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
compiled code
File 'SILGGM/libs/x64/SILGGM.dll': Found non-API call to R: 'R_UnboundValue' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points.
compiled code
File ‘SILGGM/libs/SILGGM.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Rong",
family = "Zhang",
role = c("aut", "cre"),
...[truncated]...
itt.edu"),
person(given = "Zhao",
family = "Ren",
role = "aut"),
person(given = "Wei",
family = "Chen",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Rong Zhang <roz16@pitt.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Rong",
family = "Zhang",
role = c("aut", "cre"),
...[truncated]...
itt.edu"),
person(given = "Zhao",
family = "Ren",
role = "aut"),
person(given = "Wei",
family = "Chen",
role = "aut"))
as necessary.