RcppTskit

whether package can be installed

Found the following significant warnings:
  tskit/kastore.c:1157:32: warning: unknown conversion type character 'z' in format [-Wformat=]
  tskit/kastore.c:1157:18: warning: too many arguments for format [-Wformat-extra-args]
  tskit/kastore.c:1158:32: warning: unknown conversion type character 'z' in format [-Wformat=]
  tskit/kastore.c:1158:18: warning: too many arguments for format [-Wformat-extra-args]
  tskit/kastore.c:1165:40: warning: unknown conversion type character 'z' in format [-Wformat=]
  tskit/kastore.c:1165:53: warning: unknown conversion type character 'z' in format [-Wformat=]
  tskit/kastore.c:1165:62: warning: format '%p' expects argument of type 'void *', but argument 6 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  tskit/kastore.c:1165:13: warning: unknown conversion type character 'z' in format [-Wformat=]
  tskit/kastore.c:1165:13: warning: format '%p' expects argument of type 'void *', but argument 7 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
  tskit/kastore.c:1165:13: warning: too many arguments for format [-Wformat-extra-args]
See 'd:/Rcompile/CRANpkg/local/4.4/RcppTskit.Rcheck/00install.out' for details.
* used C compiler: 'gcc.exe (GCC) 13.3.0'
* used C++ compiler: 'g++.exe (GCC) 13.3.0'

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘RcppTskit_intro.qmd’ using html
[31m

processing file: RcppTskit_intro.qmd
[39m
		Information on package 'RcppTskit'

Description:

Type:                      Package
Package:                   RcppTskit
Title:                     'R' Access to the 'tskit C' API
Version:                   0.2.0
Date:                      2026-01-27
Authors@R:                 c( person("Gregor", "Gorjanc", ,
                           "gregor.gorjanc@gmail.com", role = c("aut",
                           "cre", "cph"), comment = c(ORCID =
                           "0000-0001-8008-2787")), person("Tskit
                           Developers", role = "cph", comment =
                           "Authors of included tskit C library") )
Description:               'Tskit' enables efficient storage,
                           manipulation, and analysis of ancestral
                           recombination graphs (ARGs) using succinct
                
...[truncated]...
u/lib/libpython3.12.so:
  cannot enable executable stack as shared object requires: Invalid argument
  ---
  Backtrace:
  ▆
  1. ├─ts$r_to_py()
  2. │ └─RcppTskit:::ts_ptr_r_to_py(...)
  3. │ ├─tskit_module$load
  4. │ └─reticulate:::`$.python.builtin.module`(tskit_module, "load")
  5. │ └─reticulate::py_get_attr(x, name, TRUE)
  6. └─reticulate (local) `<fn>`()
  7.  └─reticulate:::initialize_python()
  8.  └─base::tryCatch(...)
  9.  └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  10.  └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  11.  └─value[[3L]](cond)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  [31mExecution halted[39m
  [33mWARN: Error encountered when rendering files[39m
  
Caused by error:
! System command 'quarto' failed
--- failed re-building ‘RcppTskit_intro.qmd’

SUMMARY: processing the following file failed:
  ‘RcppTskit_intro.qmd’

Error: Vignette re-building failed.
Execution halted