Skip to content

RRNA

Secondary Structure Plotting for RNA

v1.2 · Jul 10, 2024 · GPL-3

Description

Functions for creating and manipulating RNA secondary structure plots.

Downloads

CRAN

255

Last 30 days

19335th

668

Last 90 days

3K

Last year

Trend: +44.1% (30d vs prior 30d)

r2u CRAN

0

Last 30 days

25

Last 90 days

96

Last year

Trend: -100% (30d vs prior 30d)

autoCRAN

4

Last 7 days

8

Last 30 days

0

All-time

autoCRAN-only: this name is served only by autoCRAN, so the count is exact.

CRAN Check Status

13 OK
Show all 13 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Code

Structure

Lines of code

2,892

Files

28

Compiled share

0%

Has compiled src

No

Language breakdown

R 1,750 (60.5%)Docs 1,142 (39.5%)

API

Exported functions

20

Internal functions

8

Recent export changes

v1.1+21 pattern:alignCoord, pattern:aptPlotCT, pattern:backward +18 more  −1 pattern:^[[:alpha:]]+
v1.0+1 pattern:^[[:alpha:]]+

Testing & CI

Has tests

No

Test-to-code ratio

0.00

testthat edition

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

\dontrun example ratio

0%

Roxygen coverage

Has pkgdown

No

NEWS present

Yes

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

Unsafe pattern score

0

Dep constraint coverage

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

System requirements

C++ standard

License

GPL-3

License flags

SPDX valid, OSI approved

History

Versions

3

First release

2015-07-27

Latest release

2024-07-10

Avg cadence

1636 days

Cold removal rate

100%

Dep drift

0

LOC over versions

v1.0: 2,634 LOCv1.1: 2,892 LOCv1.2: 2,892 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.

Reverse Dependencies (1)

imports

Dependency Network

Dependencies Reverse dependencies rnaCrosslinkOO RRNA

Version History

4 tracked
new 1.2 Mar 10, 2026
updated 1.2 ← 1.1 diff Jul 9, 2024
updated 1.1 ← 1.0 diff May 14, 2024
new 1.0 Jul 28, 2015