PopPsiSeqR
Process and Visualize Evolve & Resequence Experiments
v1.0.2
·
Jan 12, 2026
·
MIT + file LICENSE
Description
Handle data from evolve and resequence experiments. Measured allele frequencies (e.g., from variants called from high-throughput sequencing data) are compared using an update of the PsiSeq algorithm (Earley, Eric and Corbin Jones (2011) <doi:10.1534/genetics.111.129445>). Functions for saving and loading important files are also included, as well as functions for basic data visualization.
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| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | ERROR |
| r-oldrel-macos-x86_64 | ERROR |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
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Check details (2 non-OK)
ERROR
r-oldrel-macos-arm64
package dependencies
Package required but not available: ‘ggbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-oldrel-macos-x86_64
package dependencies
Package required but not available: ‘ggbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
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ERROR 9 OK · 0 NOTE · 0 WARNING · 5 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-release-macos-arm64
package dependencies
Package required but not available: ‘ggbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-release-macos-x86_64
package dependencies
Package required but not available: ‘ggbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
ERROR
r-oldrel-macos-arm64
tests
Running ‘testthat.R’ [6s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional te ...[truncated]... ng::eval_bare(expr, quo_get_env(quo)) 4. └─ggplot2::is.ggplot(mock.plot@ggplot) 5. └─ggplot2::is_ggplot(x) 6. └─S7::S7_inherits(x, class_ggplot) [ FAIL 2 | WARN 3 | SKIP 0 | PASS 11 ] Error: ! Test failures. Execution halted
ERROR
r-oldrel-macos-x86_64
tests
Running ‘testthat.R’ [17s/21s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... ng::eval_bare(expr, quo_get_env(quo)) 4. └─ggplot2::is.ggplot(mock.plot@ggplot) 5. └─ggplot2::is_ggplot(x) 6. └─S7::S7_inherits(x, class_ggplot) [ FAIL 2 | WARN 3 | SKIP 0 | PASS 11 ] Error: ! Test failures. Execution halted
ERROR
r-oldrel-windows-x86_64
tests
Running 'testthat.R' [32s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... ng::eval_bare(expr, quo_get_env(quo)) 4. └─ggplot2::is.ggplot(mock.plot@ggplot) 5. └─ggplot2::is_ggplot(x) 6. └─S7::S7_inherits(x, class_ggplot) [ FAIL 2 | WARN 3 | SKIP 0 | PASS 11 ] Error: ! Test failures. Execution halted