PeakSegDP
Dynamic Programming Algorithm for Peak Detection in ChIP-Seq Data
Description
A quadratic time dynamic programming algorithm can be used to compute an approximate solution to the problem of finding the most likely changepoints with respect to the Poisson likelihood, subject to a constraint on the number of segments, and the changes which must alternate: up, down, up, down, etc. For more info read <http://proceedings.mlr.press/v37/hocking15.html> "PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data" by TD Hocking et al, proceedings of ICML2015.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org"),
person(given = "Guillem",
family = "Rigaill",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org"),
person(given = "Guillem",
family = "Rigaill",
role = "aut"))
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org"),
person(given = "Guillem",
family = "Rigaill",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Toby Dylan Hocking <toby.hocking@r-project.org>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Toby", "Dylan"),
family = "Hocking",
role = c("aut", "cre"),
email = "toby.hocking@r-project.org"),
person(given = "Guillem",
family = "Rigaill",
role = "aut"))
as necessary.