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PLNmodels

Poisson Lognormal Models

v1.2.2 · Mar 21, 2025 · GPL (>= 3)

Description

The Poisson-lognormal model and variants (Chiquet, Mariadassou and Robin, 2021 <doi:10.3389/fevo.2021.588292>) can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data, discriminant analysis, model-based clustering and network inference. Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.

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CRAN Check Status

3 NOTE
11 OK
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r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is 18.5Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs  12.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 18.6Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs  13.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs   1.6Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 18.5Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs  12.9Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 18.6Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs  13.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   1.4Mb
    doc    2.4Mb
    libs   1.6Mb

Dependency Network

Dependencies Reverse dependencies cli corrplot dplyr future future.apply ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr pscl purrr +6 more dependencies PLNmodels

Version History

new 1.2.2 Mar 10, 2026
updated 1.2.2 ← 1.2.1 diff Mar 20, 2025
updated 1.2.1 ← 1.2.0 diff Mar 9, 2025
updated 1.2.0 ← 1.1.0 diff Mar 4, 2024
updated 1.1.0 ← 1.0.4 diff Jan 7, 2024
updated 1.0.4 ← 1.0.3 diff Aug 23, 2023
updated 1.0.3 ← 1.0.2 diff Jun 30, 2023
updated 1.0.2 ← 1.0.1 diff Jun 20, 2023
updated 1.0.1 ← 1.0.0 diff Feb 11, 2023
updated 1.0.0 ← 0.11.7 diff Jan 5, 2023
updated 0.11.7 ← 0.11.6 diff Aug 24, 2022
updated 0.11.6 ← 0.11.5 diff Jan 31, 2022
updated 0.11.5 ← 0.11.4 diff Jan 19, 2022
updated 0.11.4 ← 0.10.6 diff Mar 15, 2021
updated 0.10.6 ← 0.10.5 diff Jun 21, 2020
updated 0.10.5 ← 0.9.5 diff Jun 15, 2020
updated 0.9.5 ← 0.9.4 diff Jan 26, 2020
updated 0.9.4 ← 0.9.3 diff Jan 13, 2020
updated 0.9.3 ← 0.9.2 diff Dec 4, 2019
new 0.9.2 May 16, 2019