Description
The tools for 'MicroRNA Set Enrichment Analysis' can identify risk pathways(or prior gene sets) regulated by microRNA set in the context of microRNA expression data. (1) This package constructs a correlation profile of microRNA and pathways by the hypergeometric statistic test. The gene sets of pathways derived from the three public databases (Kyoto Encyclopedia of Genes and Genomes ('KEGG'); 'Reactome'; 'Biocarta') and the target gene sets of microRNA are provided by four databases('TarBaseV6.0'; 'mir2Disease'; 'miRecords'; 'miRTarBase';). (2) This package can quantify the change of correlation between microRNA for each pathway(or prior gene set) based on a microRNA expression data with cases and controls. (3) This package uses the weighted Kolmogorov-Smirnov statistic to calculate an enrichment score (ES) of a microRNA set that co-regulate to a pathway , which reflects the degree to which a given pathway is associated with the specific phenotype. (4) This package can provide the visualization of the results.
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114
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12
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1
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autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 11, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Junwei Han <hanjunwei1981@163.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Junwei",
family = "Han",
role = c("aut", "cre"),
email = "hanjunwei1981@163.com"),
person(given = "Siyao",
family = "Liu",
role = "aut"))
as necessary.
Code & tests
Open call graph →Code intelligence has not been computed for this package yet.
Code
Structure
Lines of code
2,097
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
0
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
–
\dontrun example ratio
61.5%
Roxygen coverage
–
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
–
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.15.1
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
3
First release
2015-05-31
Latest release
2024-01-24
Avg cadence
1580 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.