MMD
Minimal Multilocus Distance (MMD) for Source Attribution and Loci Selection
v1.0.0
·
Jan 26, 2021
·
GPL-3
Description
The aim of the package is two-fold: (i) To implement the MMD method for attribution of individuals to sources using the Hamming distance between multilocus genotypes. (ii) To select informative genetic markers based on information theory concepts (entropy, mutual information and redundancy). The package implements the functions introduced by Perez-Reche, F. J., Rotariu, O., Lopes, B. S., Forbes, K. J. and Strachan, N. J. C. Mining whole genome sequence data to efficiently attribute individuals to source populations. Scientific Reports 10, 12124 (2020) <doi:10.1038/s41598-020-68740-6>. See more details and examples in the README file.
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CRAN Check Status
14
NOTE
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-macos-arm64 | NOTE |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | NOTE |
| r-release-macos-arm64 | NOTE |
| r-release-macos-x86_64 | NOTE |
| r-release-windows-x86_64 | NOTE |
Check details (17 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-macos-arm64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-macos-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-windows-x86_64
LazyData
'LazyData' is specified without a 'data' directory
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
Check History
NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-debian-gcc
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-fedora-clang
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-linux-x86_64-fedora-gcc
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-devel-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-patched-linux-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-release-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
NOTE
r-oldrel-windows-x86_64
Rd files
checkRd: (-1) MMD_attr.Rd:62: Lost braces; missing escapes or markup?
62 | \item Probability of attribution of each unknown individual to each source $p_{u,s}$
| ^
Dependency Network
Version History
new
1.0.0
Mar 10, 2026