LDcorSV
Linkage Disequilibrium Corrected by the Structure and the Relatedness
v1.3.4
·
Jul 29, 2025
·
GPL (>= 2)
Description
Four measures of linkage disequilibrium are provided: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).
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CRAN Check Status
14
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 30, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 10, 2026
ERROR
r-devel-macos-arm64
examples
Running examples in ‘LDcorSV-Ex.R’ failed
The error most likely occurred in:
> ### Name: LD.Measures
> ### Title: LD Measures
> ### Aliases: LD.Measures
>
> ### ** Examples
>
> data(data.test)
> Geno <- data.test[[1]]
> V.WAIS <- data.test[[2]]
>
...[truncated]...
n(i) { :
scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Error in matrix(unlist(RES), nrow = length(RES[[1]][, 1])) :
'data' must be of a vector type, was 'NULL'
Calls: LD.Measures -> matrix
Execution halted
Version History
new
1.3.4
Mar 10, 2026
new
1.0
Sep 26, 2011