KSEAapp

Kinase-Substrate Enrichment Analysis

v2.0 · Mar 13, 2026 · MIT + file LICENSE

Description

Infers relative kinase activity from phosphoproteomics data using the method described by Casado et al. (2013) <doi:10.1126/scisignal.2003573>.

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CRAN Check Status

14 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	31.3s
r-devel-linux-x86_64-debian-gcc	OK	24.6s
r-devel-linux-x86_64-fedora-clang	OK	46.7s
r-devel-linux-x86_64-fedora-gcc	OK	55.1s
r-devel-macos-arm64	OK	16s
r-devel-windows-x86_64	OK	57s
r-oldrel-macos-arm64	OK	33s
r-oldrel-macos-x86_64	OK	99s
r-oldrel-windows-x86_64	OK	62s
r-patched-linux-x86_64	OK	30s
r-release-linux-x86_64	OK	27.9s
r-release-macos-arm64	OK	17s
r-release-macos-x86_64	OK	75s
r-release-windows-x86_64	OK	53s

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 23, 2026

NOTE 0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Danica D. Wiredja <dwiredja@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Danica", "D."),
                    family = "Wiredja",
                    role = c("aut", "cre"),
                    email = "dwiredja@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Danica D. Wiredja <dwiredja@gmail.com>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = c("Danica", "D."),
                    family = "Wiredja",
                    role = c("aut", "cre"),
                    email = "dwiredja@gmail.com")
as necessary.

NOTE r-devel-linux-x86_64-fedora-clang

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-devel-linux-x86_64-fedora-gcc

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-patched-linux-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-arm64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-release-macos-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-release-windows-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-arm64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-macos-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

NOTE r-oldrel-windows-x86_64

Rd files

checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) KS
...[truncated]...
14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?

Dependency Network

Version History

updated 2.0 ← 0.99.0 diff Mar 13, 2026

new 0.99.0 Mar 10, 2026