HTRX
Haplotype Trend Regression with eXtra Flexibility (HTRX)
Description
Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | NOTE |
| r-devel-linux-x86_64-fedora-gcc | NOTE |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
Check History
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
ERROR 10 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Packages required but not available: 'caret', 'tune', 'recipes' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 2, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
ERROR 9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 25, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
package dependencies
Package required but not available: ‘caret’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.
dependencies in R code
Namespaces in Imports field not imported from: ‘recipes’ ‘tune’ All declared Imports should be used.