Skip to content

GeneNMF

Non-Negative Matrix Factorization for Single-Cell Omics

v0.9.2 · Sep 11, 2025 · GPL-3

Description

A collection of methods to extract gene programs from single-cell gene expression data using non-negative matrix factorization (NMF). 'GeneNMF' contains functions to directly interact with the 'Seurat' toolkit and derive interpretable gene program signatures.

Downloads

853

Last 30 days

4210th

2.2K

Last 90 days

6.9K

Last year

Trend: +16.7% (30d vs prior 30d)

CRAN Check Status

14 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
r-oldrel-macos-x86_64 OK
r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Dependency Network

Dependencies Reverse dependencies RcppML Matrix Seurat cluster lsa irlba pheatmap dendextend viridis colorspace GeneNMF

Version History

new 0.9.2 Mar 10, 2026
updated 0.9.2 ← 0.8.0 diff Sep 10, 2025
updated 0.8.0 ← 0.6.2 diff Apr 23, 2025
updated 0.6.2 ← 0.6.0 diff Nov 11, 2024
updated 0.6.0 ← 0.4.0 diff Jul 21, 2024
new 0.4.0 Feb 28, 2024