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GTEs

Group Technical Effects

v1.0.0 · Feb 27, 2025 · GPL-3
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Description

Implementation of the GTE (Group Technical Effects) model for single-cell data. GTE is a quantitative metric to assess batch effects for individual genes in single-cell data. For a single-cell dataset, the user can calculate the GTE value for individual features (such as genes), and then identify the highly batch-sensitive features. Removing these highly batch-sensitive features results in datasets with low batch effects.

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r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
NOTE r-oldrel-macos-arm64

installed package size

installed size is 12.7Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      8.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.8Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      8.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      1.0Mb

Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-oldrel-macos-arm64

installed package size

installed size is 12.7Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      8.1Mb
NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.8Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      8.2Mb
NOTE r-oldrel-windows-x86_64

installed package size

installed size is  5.6Mb
  sub-directories of 1Mb or more:
    extdata   4.5Mb
    libs      1.0Mb

Dependency Network

Dependencies Reverse dependencies Matrix matrixStats Rcpp RcppEigen dplyr GTEs

Version History

new 1.0.0 Mar 10, 2026