GDILM.SEIRS
Spatial Modeling of Infectious Disease with Reinfection
v0.0.6
·
Feb 13, 2026
·
MIT + file LICENSE
Description
Geographically Dependent Individual Level Models (GDILMs) within the Susceptible-Exposed-Infectious-Recovered-Susceptible (SEIRS) framework are applied to model infectious disease transmission, incorporating reinfection dynamics. This package employs a likelihood based Monte Carlo Expectation Conditional Maximization (MCECM) algorithm for estimating model parameters. It also provides tools for GDILM fitting, parameter estimation, AIC calculation on real pandemic data, and simulation studies customized to user-defined model settings.
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CRAN Check Status
14
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 4, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 26, 2026
ERROR
r-patched-linux-x86_64
tests
Running ‘testthat.R’ [131s/161s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additiona ...[truncated]... m_Par_Est(...) at test-GDILM_SEIRS_Sim_Par_Est.R:2:3 2. └─GDILM.SEIRS (local) estfun(...) 3. ├─base::solve(S40) 4. └─base::solve.default(S40) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] Error: ! Test failures. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 20, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 18, 2026
ERROR
r-devel-windows-x86_64
tests
Running 'testthat.R' [64s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test ...[truncated]... m_Par_Est(...) at test-GDILM_SEIRS_Sim_Par_Est.R:2:3 2. └─GDILM.SEIRS (local) estfun(...) 3. ├─base::solve(S40) 4. └─base::solve.default(S40) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] Error: ! Test failures. Execution halted
OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 16, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 16, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
tests
Running ‘testthat.R’ [43s/53s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional ...[truncated]... m_Par_Est(...) at test-GDILM_SEIRS_Sim_Par_Est.R:2:3 2. └─GDILM.SEIRS (local) estfun(...) 3. ├─base::solve(S40) 4. └─base::solve.default(S40) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ] Error: ! Test failures. Execution halted