EcoCleanR
Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates
v1.0.3
·
Feb 13, 2026
·
MIT + file LICENSE
Description
Provides step-by-step automation for integrating biodiversity data from multiple online aggregators, merging and cleaning datasets while addressing challenges such as taxonomic inconsistencies, georeferencing issues, and spatial or environmental outliers. Includes functions to extract environmental data and to define the biogeographic ranges in which species are most likely to occur. For methodological details see the associated publication.<doi: 10.1002/ecog.08203>.
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CRAN Check Status
13
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
ERROR
r-devel-linux-x86_64-debian-gcc
package dependencies
Package required but not available: ‘mregions2’ Packages suggested but not available for checking: 'robis', 'ridigbio' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 14, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 7, 2026
ERROR
r-patched-linux-x86_64
tests
Running ‘testthat.R’ [22s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
xpected `any(grepl("Mexacanthina lugubris \\([0-9]+\\)", result$ecodata_syn_with_count))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
Error:
! Test failures.
Execution halted
OK 12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 26, 2026
ERROR 13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 19, 2026
ERROR
r-release-linux-x86_64
tests
Running ‘testthat.R’ [23s/82s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional
...[truncated]...
xpected `any(grepl("Mexacanthina lugubris \\([0-9]+\\)", result$ecodata_syn_with_count))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 4 | WARN 0 | SKIP 7 | PASS 25 ]
Error:
! Test failures.
Execution halted