Eagle
Multiple Locus Association Mapping on a Genome-Wide Scale
v2.5
·
Nov 29, 2021
·
GPL-3
Description
An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Downloads
CRAN
367
Last 30 days
10835th
967
Last 90 days
4.4K
Last year
Trend: +33.5% (30d vs prior 30d)
r2u
CRAN
40
Last 30 days
120
Last 90 days
416
Last year
Trend: -21.6% (30d vs prior 30d)
CRAN Check Status
7
NOTE
6
OK
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | NOTE |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | NOTE |
Check details (7 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:126-133: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:134-135: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:136-137: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:163-165: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:166-173: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:126-133: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:134-135: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:136-137: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:163-165: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:166-173: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE
r-release-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
Check History
NOTE 6 OK · 7 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 9, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-release-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
ERROR 6 OK · 6 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
ERROR
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-release-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-oldrel-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE 5 OK · 9 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Apr 22, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 12.7Mb
sub-directories of 1Mb or more:
libs 11.3Mb
shiny_app 1.1Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 12.9Mb
sub-directories of 1Mb or more:
libs 11.4Mb
shiny_app 1.1Mb
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
ERROR 5 OK · 8 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Apr 18, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
ERROR
r-devel-windows-x86_64
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/Eagle.Rcheck/00install.out' for details.
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 12.7Mb
sub-directories of 1Mb or more:
libs 11.3Mb
shiny_app 1.1Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 12.9Mb
sub-directories of 1Mb or more:
libs 11.4Mb
shiny_app 1.1Mb
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE 3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-devel-linux-x86_64-debian-clang
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-linux-x86_64-debian-gcc
CRAN incoming feasibility
Maintainer: ‘Andrew George <geo047@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
NOTE
r-devel-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-devel-windows-x86_64
C++ specification
Obsolete C++11 standard request will be ignored
NOTE
r-release-linux-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-arm64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-macos-x86_64
Rd files
checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:103: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:123-125: Lost braces ...[truncated]... ces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:174-176: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:177-178: Lost braces in \itemize; meant \describe ? checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?
NOTE
r-release-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 12.7Mb
sub-directories of 1Mb or more:
libs 11.3Mb
shiny_app 1.1Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 12.9Mb
sub-directories of 1Mb or more:
libs 11.4Mb
shiny_app 1.1Mb
NOTE
r-oldrel-windows-x86_64
C++ specification
Specified C++11: please drop specification unless essential
Dependency Network
Version History
21 tracked
new
2.5
Mar 10, 2026