Eagle

Multiple Locus Association Mapping on a Genome-Wide Scale

v2.5 · Nov 29, 2021 · GPL-3

Description

An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.

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Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	NOTE	289s
r-devel-linux-x86_64-debian-gcc	NOTE	212.8s
r-devel-linux-x86_64-fedora-clang	OK	455.5s
r-devel-linux-x86_64-fedora-gcc	OK	538.1s
r-devel-macos-arm64	OK	34s
r-devel-windows-x86_64	NOTE	358s
r-oldrel-macos-arm64	NOTE
r-oldrel-macos-x86_64	NOTE	104s
r-oldrel-windows-x86_64	NOTE	392s
r-patched-linux-x86_64	OK	279.9s
r-release-linux-x86_64	OK	258.9s
r-release-macos-arm64	NOTE
r-release-macos-x86_64	NOTE	113s
r-release-windows-x86_64	NOTE	328s

Check details (12 non-OK)

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-windows-x86_64

C++ specification

Obsolete C++11 standard request will be ignored

NOTE r-oldrel-macos-arm64

Rd files

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installed package size

installed size is 12.7Mb
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NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.9Mb
  sub-directories of 1Mb or more:
    libs       11.4Mb
    shiny_app   1.1Mb

NOTE r-oldrel-windows-x86_64

C++ specification

Specified C++11: please drop specification unless essential

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NOTE r-release-windows-x86_64

C++ specification

Specified C++11: please drop specification unless essential

Check History

NOTE 3 OK · 11 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Andrew George  <geo047@gmail.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

NOTE r-devel-macos-arm64

Rd files

checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
checkRd: (-1) AM.Rd:99-102: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?

NOTE r-devel-windows-x86_64

C++ specification

Obsolete C++11 standard request will be ignored

NOTE r-release-linux-x86_64

Rd files

checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) AM.Rd:95-98: Lost braces in \itemize; meant \describe ?
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checkRd: (-1) AM.Rd:179-180: Lost braces in \itemize; meant \describe ?

NOTE r-release-windows-x86_64

C++ specification

Specified C++11: please drop specification unless essential

NOTE r-oldrel-macos-arm64

installed package size

installed size is 12.7Mb
  sub-directories of 1Mb or more:
    libs       11.3Mb
    shiny_app   1.1Mb

NOTE r-oldrel-macos-x86_64

installed package size

installed size is 12.9Mb
  sub-directories of 1Mb or more:
    libs       11.4Mb
    shiny_app   1.1Mb

NOTE r-oldrel-windows-x86_64

C++ specification

Specified C++11: please drop specification unless essential

Dependency Network

Version History

new 2.5 Mar 10, 2026

updated 2.5 ← 2.4.5 diff Nov 29, 2021

updated 2.4.5 ← 2.4.4 diff Jun 9, 2021

updated 2.4.4 ← 2.4.3 diff Apr 21, 2021

updated 2.4.3 ← 2.4.2 diff Jan 11, 2021

updated 2.4.2 ← 2.4.1 diff Dec 5, 2020

updated 2.4.1 ← 2.4 diff Oct 18, 2020

updated 2.4 ← 2.3 diff Aug 25, 2020

updated 2.3 ← 2.2 diff Jul 21, 2020

updated 2.2 ← 2.1.1 diff Mar 2, 2020

updated 2.1.1 ← 2.1.0 diff Nov 16, 2019

updated 2.1.0 ← 2.0.0 diff Nov 13, 2019

updated 2.0.0 ← 1.5.2 diff Nov 6, 2019

updated 1.5.2 ← 1.5.1 diff Aug 21, 2019

updated 1.5.1 ← 1.5.0 diff May 23, 2019

updated 1.5.0 ← 1.4.0 diff May 16, 2019

updated 1.4.0 ← 1.3.0 diff Apr 22, 2019

updated 1.3.0 ← 1.2.0 diff Jan 30, 2019

updated 1.2.0 ← 1.1.0 diff Dec 16, 2018

updated 1.1.0 ← 1.0.2 diff Aug 21, 2018

Maintainer

Andrew George

Dependencies

Depends

R (>= 4.0) shinyFiles shinyBS ggplot2 ggthemes plotly

Imports

R.utils mmap shiny shinythemes shinyjs fontawesome stats utils parallel data.table

Compilation

Needs compilation

First Published

Aug 27, 2017

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