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EQUALPrognosis

Analysing Prognostic Studies

v0.1.3 · Mar 20, 2026 · GPL (>= 3)

Description

Functions that help with analysis of prognostic study data. This allows users with little experience of developing models to develop models and assess the performance of the prognostic models. This also summarises the information, so the performance of multiple models can be displayed simultaneously. This minor update fixes issues related to memory requirements with large number of simulations and deals with situations when there is overfitting of data. Gurusamy, K (2026)<https://github.com/kurinchi2k/EQUALPrognosis>.

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CRAN Check Status

3 ERROR
11 OK
Show all 14 flavors
Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 ERROR
r-oldrel-macos-x86_64 ERROR
r-oldrel-windows-x86_64 ERROR
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (3 non-OK)
ERROR r-oldrel-macos-arm64

examples

Running examples in ‘EQUALPrognosis-Ex.R’ failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # Correct parameters ####
> # Binary outcome
> # verbose is TRUE, therefore, the outcome message will be displayed
> results <- create_generic_input_parameters(
+ general_title = "Prediction of penguin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted
ERROR r-oldrel-macos-x86_64

examples

Running examples in ‘EQUALPrognosis-Ex.R’ failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # Correct parameters ####
> # Binary outcome
> # verbose is TRUE, therefore, the outcome message will be displayed
> results <- create_generic_input_parameters(
+ general_title = "Prediction of penguin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted
ERROR r-oldrel-windows-x86_64

examples

Running examples in 'EQUALPrognosis-Ex.R' failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # Correct parameters ####
> # Binary outcome
> # verbose is TRUE, therefore, the outcome message will be displayed
> results <- create_generic_input_parameters(
+ general_title = "Prediction of penguin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted

Check History

ERROR 11 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE Mar 10, 2026
ERROR r-oldrel-macos-arm64

examples

Running examples in ‘EQUALPrognosis-Ex.R’ failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # C
...[truncated]...
uin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted
ERROR r-oldrel-macos-x86_64

examples

Running examples in ‘EQUALPrognosis-Ex.R’ failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # C
...[truncated]...
uin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted
ERROR r-oldrel-windows-x86_64

examples

Running examples in 'EQUALPrognosis-Ex.R' failed
The error most likely occurred in:

> ### Name: create_generic_input_parameters
> ### Title: Create generic input parameters
> ### Aliases: create_generic_input_parameters
> 
> ### ** Examples
> 
> # C
...[truncated]...
uin species", simulations = 2000,
+ simulations_per_file = 20, seed = 1, df = penguins, outcome_name = "species",
+ outcome_type = "binary", outcome_time = NA, outcome_count = FALSE, verbose = TRUE)
Error: object 'penguins' not found
Execution halted

Dependency Network

Dependencies Reverse dependencies ggplot2 survival base64enc CalibrationCurves mime predtools pROC stringr EQUALPrognosis

Version History

updated 0.1.3 ← 0.1.2 diff Mar 20, 2026
new 0.1.2 Mar 10, 2026
updated 0.1.2 ← 0.1.0 diff Feb 3, 2026
new 0.1.0 Jan 27, 2026