EHRtemporalVariability
Delineating Temporal Dataset Shifts in Electronic Health Records
Description
Functions to delineate temporal dataset shifts in Electronic Health Records through the projection and visualization of dissimilarities among data temporal batches. This is done through the estimation of data statistical distributions over time and their projection in non-parametric statistical manifolds, uncovering the patterns of the data latent temporal variability. 'EHRtemporalVariability' is particularly suitable for multi-modal data and categorical variables with a high number of values, common features of biomedical data where traditional statistical process control or time-series methods may not be appropriate. 'EHRtemporalVariability' allows you to explore and identify dataset shifts through visual analytics formats such as Data Temporal heatmaps and Information Geometric Temporal (IGT) plots. An additional 'EHRtemporalVariability' Shiny app can be used to load and explore the package results and even to allow the use of these functions to those users non-experienced in R coding. (Sáez et al. 2020) <doi:10.1093/gigascience/giaa079>.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | ERROR |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (1 non-OK)
re-building of vignette outputs
Error(s) in re-building vignettes:
...
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Quitting from EHRtemporalVariability.Rmd:106-114 [EHRtemporalVariabilityObj1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `load()`:
! cannot read from connection
---
Backtrace:
▆
1. └─base::load(url(githubURL))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Check History
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 24, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown Quitting from EHRtemporalVariability.Rmd:106-114 [EHRtemporalVariabilityObj1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ability.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘EHRtemporalVariability.Rmd’ SUMMARY: processing the following file failed: ‘EHRtemporalVariability.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 23, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 20, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown Quitting from EHRtemporalVariability.Rmd:331-334 [loadExampleFile] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ability.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘EHRtemporalVariability.Rmd’ SUMMARY: processing the following file failed: ‘EHRtemporalVariability.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Jun 12, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Jun 8, 2026
package dependencies
Package required but not available: ‘plotly’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 29, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 28, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown Quitting from EHRtemporalVariability.Rmd:106-114 [EHRtemporalVariabilityObj1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ralVariability-DataExamples/raw/master/variabilityDemoNHDS.RData' --- failed re-building ‘EHRtemporalVariability.Rmd’ SUMMARY: processing the following file failed: ‘EHRtemporalVariability.Rmd’ Error: Vignette re-building failed. Execution halted
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 25, 2026
ERROR 12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE May 24, 2026
re-building of vignette outputs
Error(s) in re-building vignettes: ... --- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown Quitting from EHRtemporalVariability.Rmd:106-114 [EHRtemporalVariabilityObj1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...[truncated]... ralVariability-DataExamples/raw/master/variabilityDemoNHDS.RData' --- failed re-building ‘EHRtemporalVariability.Rmd’ SUMMARY: processing the following file failed: ‘EHRtemporalVariability.Rmd’ Error: Vignette re-building failed. Execution halted